Try different Fn keys to see if Brightness control works. If non works, could be you need to replace your kexts with ElanTouch.
USB ports, strange only one works. Have you confirm the other work under windows? Try removing GenericUSBXHCI.kext.
Not sure what the issue is with iTunes, seems you have full QE/CI.
As for sound after sleep, could be an EAPD issue, try this. You'll need to know the node-ID for this.