Remove VoodooHDA.kext
It's disabling AppleALC.kext
You're using the wrong SMBIOS for Haswell, should be MBP11,1
You have DropOEM checked but you don't have static patched DSDT/SSDT
Since you're doing HOTPatching, you should have AutoMerge enable instead, uncheck DropOEM
Nvidia is not being disable via SSDT-DDGPU.aml, it disabled the wrong address, should be
\_SB.PCI0.PEG0.PEGP._OFF not \_SB.PCI0.RP05.PEGP._OFF according to your IOReg file